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Forsíða

Forsíða

Páll Melsted - Professor

Páll Melsted

–

School of Engineering and Natural Sciences

Páll Melsted

Professor

Location
Gróska / Gr-322
Phone
525 - 4633 8521024
Email
pmelsted [at] hi.is

Unit
Faculty of Industrial Engineering, Mechanical Engineering and Computer Science
Website
http://notendur.hi.is/pmelsted/

Published works

2024

The impact of package selection and versioning on single-cell RNA-seq analysis
Batch correction methods used in single cell RNA-sequencing analyses are often poorly calibrated

2023

Voyager: exploratory single-cell genomics data analysis with geospatial statistics
BUSZ: compressed BUS filesBioinformatics

2022

Annotation-agnostic discovery of associations between novel gene isoforms and phenotypes

2020

Algorithm 1005ACM Transactions on Mathematical Software

2019

A PRPH splice-donor variant associates with reduced sural nerve amplitude and risk of peripheral neuropathy
The barcode, UMI, set format and BUStoolsBioinformatics
A discriminative learning approach to differential expression analysis for single-cell RNA-seqNature Methods
Modular and efficient pre-processing of single-cell RNA-seq

2018

The Barcode, UMI, Set format and BUStools
Coding variants in RPL3L and MYZAP increase risk of atrial fibrillationCommunications Biology
Insights into imprinting from parent-of-origin phased methylomes and transcriptomesNature Genetics

2017

Graphtyper enables population-scale genotyping using pangenome graphsNature Genetics
Diversity in non-repetitive human sequences not found in the reference genomeNature Genetics
Fusion detection and quantification by pseudoalignment
Differential analysis of RNA-seq incorporating quantification uncertaintyNature Methods

2016

Looking into the past - the reaction of three grouse species to climate change over the last million years using whole genome sequencesMolecular Ecology
Near-optimal probabilistic RNA-seq quantificationNature Biotechnology
Mash: fast genome and metagenome distance estimation using MinHashGenome Biology
chopBAI: BAM index reduction solves I/O bottlenecks in the joint analysis of large sequencing cohortsBioinformatics
The Lair: a resource for exploratory analysis of published RNA-Seq dataBMC Bioinformatics

2015

PopIns: population-scale detection of novel sequence insertionsBioinformatics
chopBAI: BAM index reduction solves I/O bottlenecks in the joint analysis of large sequencing cohorts
BamHash: a checksum program for verifying the integrity of sequence dataBioinformatics
BamHash: a checksum program for verifying the integrity of sequence data

2014

KmerStream: Streaming algorithms for k-mer abundance estimation
KmerStream: streaming algorithms for k -mer abundance estimationBioinformatics

2012

Maximum matchings in random bipartite graphs and the space utilization of Cuckoo Hash tablesRandom Struct. Alg.

2011

Efficient counting of k-mers in DNA sequences using a bloom filterBMC Bioinformatics
A Genome Sequence Resource for the Aye-Aye (Daubentonia madagascariensis), a Nocturnal Lemur from MadagascarGenome Biology and Evolution
An Analysis of Random-Walk Cuckoo HashingSIAM J. Comput.
Randomly coloring simple hypergraphsInformation Processing Letters

2010

Genomic-scale capture and sequencing of endogenous DNA from fecesMolecular Ecology

2009

An Analysis of Random-Walk Cuckoo HashingApproximation, Randomization, and Combinatorial Optimization. Algorithms and Techniques

2008

Finding a Maximum Matching in a Sparse Random Graph in O(n) Expected TimeAutomata, Languages and Programming

Keywords for Specialisation:

Theoretical computer science

probabilistic combinatorics